calculateParametersGsb.AffymetrixCelSet

AffymetrixCelSet.calculateParametersGsb

calculateParametersGsb,AffymetrixCelSet-method

The number of random PMs to use in estimation.

nbrOfPms

A <code><a rd-options="base" href="/link/numeric?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::numeric">numeric</a></code> <code><a rd-options="base" href="/link/vector?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of probe affinities.

affinities

An (optional) <code><a rd-options="base" href="/link/integer?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::integer">integer</a></code> specifying a temporary random seed
    to be used during processing.  The random seed is set to its original
    state when done.  If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, it is not set.

seed

See <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


 Computes parameters for adjustment of specific binding.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

calculateParametersGsb.AffymetrixCelSet: Computes parameters for adjustment of specific binding

Description

Usage

Arguments

Details