createMonocellCdf.AffymetrixCdfFile

AffymetrixCdfFile.createMonocellCdf

createMonocellCdf,AffymetrixCdfFile-method

AffymetrixCdfFile.createMonoCell

createMonoCell.AffymetrixCdfFile

createMonoCell,AffymetrixCdfFile-method

chipType

Tags added to the chip type of the new CDF.

path

Number of cells per group field the new CDF
     should have.

nbrOfCellsPerField

Additional arguments passed to <code><a rd-options="affxparser" href="/link/writeCdf?package=aroma.affymetrix&version=3.0.0&to=affxparser" data-mini-rdoc="affxparser::writeCdf">writeCdf</a></code>.

A <code><a rd-options="base" href="/link/double?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::double">double</a></code> saying if more or less units should be converted
     per chunk.  A smaller value uses less memory.

A <code><a rd-options="base" href="/link/logical?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::logical">logical</a></code> or <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


 Creates a mono-cell version of the CDF.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

createMonocellCdf.AffymetrixCdfFile: Creates a mono-cell version of the CDF

Description

Usage

Arguments

Value

See Also