extractMatrix.AffymetrixCelSet

AffymetrixCelSet.extractMatrix

extractMatrix,AffymetrixCelSet-method

(The subset of cells to be matched.
    If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all cells are considered.

cells

field

If <code><a rd-options="base:logical" href="/link/TRUE?package=aroma.affymetrix&version=3.0.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, singleton dimensions are dropped.

drop

See <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


 Extract data as a matrix for a set of arrays.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

extractMatrix.AffymetrixCelSet: Extract data as a matrix for a set of arrays

Description

Usage

Arguments

Value

See Also