fit.SmoothMultiarrayModel

SmoothMultiarrayModel.fit

fit,SmoothMultiarrayModel-method

A <code><a rd-options="base" href="/link/data.frame?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::data.frame">data.frame</a></code> with columns <code>M</code> (log-ratio) and
     <code>x</code> (locus position).
  

data

An <code><a rd-options="base" href="/link/integer?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::integer">integer</a></code> specifying the index of the chromosome to
     be fitted.

chromosome

Additional arguments passed down to the internal fit function.

See <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


 Fits the model for one chromosome across samples.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

fit.SmoothMultiarrayModel: Fits the model for one chromosome across samples

Description

Usage

Arguments

See Also