getAM.ChipEffectFile

ChipEffectFile.getAM

getAM,ChipEffectFile-method

The second <code><a rd-options="" href="/link/ChipEffectFile?package=aroma.affymetrix&version=3.0.0" data-mini-rdoc="aroma.affymetrix::ChipEffectFile">ChipEffectFile</a></code> object used as the
    reference.

other

(The subset of units to be matched.
    If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all units are considered.

units

See <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


 Gets the log-intensities and log-ratios of chip effects for two arrays.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

getAM.ChipEffectFile: Gets the log-intensities and log-ratios of chip effects for two arrays

Description

Usage

Arguments

Value

See Also