getAlleleCellPairs.AffymetrixCdfFile

AffymetrixCdfFile.getAlleleCellPairs

getAlleleCellPairs,AffymetrixCdfFile-method

A <code><a rd-options="base" href="/link/integer?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::integer">integer</a></code> <code><a rd-options="base" href="/link/vector?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of units to query.
   If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all units are considered.

units

A <code><a rd-options="base" href="/link/character?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::character">character</a></code> string specifying what type of probes
   to return.

stratifyBy

A <code><a rd-options="base" href="/link/logical?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::logical">logical</a></code> or a <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code> object.

verbose


  Gets the cell indices of allele pairs
  in units of type "genotyping" with 2 or 4 unit groups.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

getAlleleCellPairs.AffymetrixCdfFile: Gets the cell indices of allele pairs

Description

Usage

Arguments

Value

See Also