getUnitIntensities.AffymetrixCelSet

AffymetrixCelSet.getUnitIntensities

getUnitIntensities,AffymetrixCelSet-method

An <code><a rd-options="base" href="/link/integer?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::integer">integer</a></code> index <code><a rd-options="base" href="/link/vector?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::vector">vector</a></code> specifying units to be read.
   If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all units are read.

units

Arguments passed to the low-level function for reading
   CEL units, i.e. <code><a rd-options="affxparser" href="/link/readCelUnits?package=aroma.affymetrix&version=3.0.0&to=affxparser" data-mini-rdoc="affxparser::readCelUnits">readCelUnits</a></code>.
   If <code>units</code> is not already a CDF <code><a rd-options="base" href="/link/list?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::list">list</a></code> structure, these arguments
   are also passed to <code>readUnits()</code> of <code><a rd-options="" href="/link/AffymetrixCdfFile?package=aroma.affymetrix&version=3.0.0" data-mini-rdoc="aroma.affymetrix::AffymetrixCdfFile">AffymetrixCdfFile</a></code>.

If <code><a rd-options="base:logical" href="/link/TRUE?package=aroma.affymetrix&version=3.0.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, cached values are ignored.

force

If <code><a rd-options="base:logical" href="/link/TRUE?package=aroma.affymetrix&version=3.0.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, progress details are printed, otherwise not.
   May also be a <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code> object.

verbose


  Gets cell signals for a subset of units and a subset of arrays.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

getUnitIntensities.AffymetrixCelSet: Gets cell signals for a subset of units and a subset of arrays

Description

Usage

Arguments

Value

See Also