plotDensity.GenomeInformation

GenomeInformation.plotDensity

plotDensity,GenomeInformation-method

chromosome

Additional arguments passed to <code><a rd-options="aroma.affymetrix:getPositions.GenomeInformation" href="/link/*getPositions?package=aroma.affymetrix&version=3.0.0&to=aroma.affymetrix%3AgetPositions.GenomeInformation" data-mini-rdoc="aroma.affymetrix:getPositions.GenomeInformation::*getPositions">*getPositions</a>()</code>.

A bandwidth parameter for the density estimator.

adjust

The label on the x-axis.  If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, a default will generated.

xlab

The title of the plot.  If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, a default will generated.

main

If <code><a rd-options="base:logical" href="/link/TRUE?package=aroma.affymetrix&version=3.0.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, the plot is annotated with extra information.

annotate


  Plots the density of SNPs for a given chromosome.


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

plotDensity.GenomeInformation: Plots the density of SNPs for a given chromosome

Description

Usage

Arguments

Value

See Also