readUnits.AffymetrixCdfFile

AffymetrixCdfFile.readUnits

readUnits,AffymetrixCdfFile-method

The units to be read. If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all units are read.

units

Additional arguments passed to <code><a rd-options="affxparser" href="/link/readCdfUnits?package=aroma.affymetrix&version=3.0.0&to=affxparser" data-mini-rdoc="affxparser::readCdfUnits">readCdfUnits</a></code>.

A <code><a rd-options="base" href="/link/logical?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::logical">logical</a></code> or <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.affymetrix&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


 Reads CDF data unit by unit for all or a subset of units (probeset).


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

readUnits.AffymetrixCdfFile: Reads CDF data unit by unit

Description

Usage

Arguments

Value

Caching

See Also