readUnits.AffymetrixCelFile

AffymetrixCelFile.readUnits

readUnits,AffymetrixCelFile-method

The units to be read. If <code><a rd-options="base" href="/link/NULL?package=aroma.affymetrix&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all units are read.

units

An alternative CDF structure to be used.  This overrides
    the <code>units</code> arguments.

Arguments passed to <code>getUnits()</code> of the
    <code><a rd-options="" href="/link/AffymetrixCdfFile?package=aroma.affymetrix&version=3.0.0" data-mini-rdoc="aroma.affymetrix::AffymetrixCdfFile">AffymetrixCdfFile</a></code> class (if <code>cdf</code> was not specified),
    but also to the <code><a rd-options="affxparser" href="/link/readCelUnits?package=aroma.affymetrix&version=3.0.0&to=affxparser" data-mini-rdoc="affxparser::readCelUnits">readCelUnits</a></code> methods.


 Reads CEL data unit by unit for all or a subset of units (probeset).


methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

readUnits.AffymetrixCelFile: Reads CEL data unit by unit

Description

Usage

Arguments

Value

Caching

See Also