getCellIndices.ProbeAffinityFile

ProbeAffinityFile.getCellIndices

getCellIndices,ProbeAffinityFile-method

Retrieves tree list of cell indices for a set of units from the associated CDF.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getCellIndices.ProbeAffinityFile function

<dl> <dt>...</dt>
<dd>Additional arguments passed to <code>getCellIndices()</code>
 of <code>AffymetrixCdfFile</code>.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Retrieves tree list of cell indices for a set of units — getCellIndices.ProbeAffinityFile

<dl>

 <dt>...</dt>
<dd>Additional arguments passed to <code>getCellIndices()</code>
 of <code>AffymetrixCdfFile</code>.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Retrieves tree list of cell indices for a set of units

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getCellIndices.ProbeAffinityFile: Retrieves tree list of cell indices for a set of units

Description

Usage

Value

Arguments

See Also