AffymetrixCdfFile$findByChipType

findByChipType.AffymetrixCdfFile

AffymetrixCdfFile.findByChipType

findByChipType,AffymetrixCdfFile-method

Locates a CDF file from its chip type.

methods

internal

programming

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

AffymetrixCdfFile$findByChipType function

<dl> <dt>chipType</dt>
<dd>A <code><a href="/link/character?package=aroma.affymetrix&version=3.2.3" data-mini-rdoc="aroma.affymetrix::character">character</a></code> string.</dd> <dt>tags</dt>
<dd>An optional <code><a href="/link/character?package=aroma.affymetrix&version=3.2.3" data-mini-rdoc="aroma.affymetrix::character">character</a></code> <code><a href="/link/vector?package=aroma.affymetrix&version=3.2.3" data-mini-rdoc="aroma.affymetrix::vector">vector</a></code> of tags.</dd> <dt>pattern</dt>
<dd>An optional <code><a href="/link/character?package=aroma.affymetrix&version=3.2.3" data-mini-rdoc="aroma.affymetrix::character">character</a></code> string.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>.useAffxparser</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.3" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, <code>findCdf</code> is used if
 the CDF could not be located.</dd></dl>

Arguments

Locates a CDF file from its chip type — AffymetrixCdfFile$findByChipType

<dl>

 <dt>chipType</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string.</dd>

 <dt>tags</dt>
<dd>An optional <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> of tags.</dd>

 <dt>pattern</dt>
<dd>An optional <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>.useAffxparser</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, <code>findCdf</code> is used if
 the CDF could not be located.</dd>

</dl>

Locates a CDF file from its chip type

AffymetrixCdfFile$findByChipType: Locates a CDF file from its chip type

Description

Usage

Value

Arguments

See Also