aroma.affymetrix (version 3.2.3)

ChipEffectFile$fromDataFile: Retrieve an existing CEL file, or create from CDF template if missing

Description

Retrieve an existing CEL file, or create from CDF template if missing.

Usage

## Static method (use this):
## ChipEffectFile$fromDataFile(df=NULL, filename=sprintf("%s,chipEffects.CEL",
##   getFullName(df)), path, name=getName(df), cdf=NULL, ..., verbose=FALSE)
## Don't use the below:
# S3 method for ChipEffectFile
fromDataFile(static, df=NULL, filename=sprintf("%s,chipEffects.CEL", getFullName(df)),
  path, name=getName(df), cdf=NULL, ..., verbose=FALSE)

Value

Returns a ChipEffectFile.

Arguments

static

df

filename

The filename of the CEL file.

path

The path to the directory where to find/create the CEL file.

name

The name of the array to be stored in the CEL header.

cdf

The template AffymetrixCdfFile used for creating a CEL file from scratch.

...

Passed to createCel.

verbose

See Verbose.

Author

Henrik Bengtsson

See Also

allocateFromCdf() of AffymetrixCelFile. For more information see ChipEffectFile.