Model: The Model class

Description

Package: aroma.affymetrix
Class Model

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model

Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, CrlmmModel, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel, UnitModel

public abstract static class Model
extends ParametersInterface

This class is abstract and represents a generic model that applies to a data set.

Usage

Model(dataSet=NULL, tags="*", ..., .onUnknownArgs=c("error", "warning", "ignore"))

Arguments

dataSet: The data set to which this model should be fitted.
tags: A character vector of tags to be appended to the tags of the input data set.
...: Not used.
.onUnknownArgs: A character string specifying what should occur if there are unknown arguments in ....

Fields and Methods

Methods:

	`fit`	Estimates the model parameters.
	`getAsteriskTags`	-
	`getDataSet`	Gets the input data set for this model.
	`getFullName`	Gets the full name of the output set.
	`getName`	Gets the name of the output data set.
	`getPath`	Gets the path of this model.
	`getTags`	Gets the tags of the output data set.
	`setTags`	Sets the tags to be appended.

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author

Henrik Bengtsson