Gets all or a subset of the fields in a CEL file for all or a subset of the cells.

readRawData.AffymetrixCelFile

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

readRawData.AffymetrixCelFile function

Gets all or a subset of the fields in a CEL file — readRawData.AffymetrixCelFile

<dl>

 <dt>indices</dt>
<dd>A <code><a href='https://rdrr.io/r/base/numeric.html'>numeric</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> of cell indices. If <code><a href='https://rdrr.io/r/base/NULL.html'>NULL</a></code>, all cells
 are considered.</dd>

 <dt>fields</dt>
<dd>Names of fields to be retrieved.</dd>

 <dt>...</dt>
<dd>Additional arguments passed to <code>readCel</code>.</dd>

 <dt>drop</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code> and a single field is returned, then data is
 returned as a <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code>, otherwise as a <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></code>.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or <code>Verbose</code>.</dd>

</dl>

readRawData.AffymetrixCelFile: Gets all or a subset of the fields in a CEL file

Description

Usage

Arguments

Value

See Also