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aroma.apd: A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]

Installation

R package aroma.apd is available on CRAN and can be installed in R as:

install.packages("aroma.apd")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use:

remotes::install_github("HenrikBengtsson/aroma.apd", ref="develop")

This will install the package from source.

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Install

install.packages('aroma.apd')

Monthly Downloads

832

Version

0.7.1

License

LGPL (>= 2.1)

Issues

0

Pull Requests

0

Stars

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Forks

0

Maintainer

Henrik Bengtsson

Last Published

April 6th, 2025

Functions in aroma.apd (0.7.1)

updateApd

Updates an Affymetrix probe data (APD) file
readApdUnits

Reads Affymetrix probe data (APD) as units (probesets)
writeApdMap

Writes an APD probe map file
aroma.apd-package

Package aroma.apd
celToApd

Generates an APD file from an Affymetrix CEL file
readApdMap

Reads an APD probe map file
createApd

Creates an Affymetrix probe data (APD) file
gtypeCelToPQ

Function to immitate Affymetrix' gtype_cel_to_pq software
readApd

Reads an Affymetrix probe data (APD) file
cdfToApdMap

Generates an APD read map file from an Affymetrix CDF file
findApdMap

Search for APD map files in multiple directories
updateApdHeader

Updates the header of an Affymetrix probe data (APD) file
Non-documented objects

Non-documented objects
readApdHeader

Reads the header of an Affymetrix probe data (APD) file
readApdRectangle

Reads a spatial subset of probe-level data from Affymetrix APD files
updateApdUnits

Updates an Affymetrix probe data (APD) file by units (probesets)
writeApd

Writes an APD probe data file