TotalCnKernelSmoothing

Arguments passed to <code><a href="/link/TotalCnSmoothing?package=aroma.cn&version=0.5.2" rd-options="" data-mini-rdoc="aroma.cn::TotalCnSmoothing">TotalCnSmoothing</a></code>.

A <code><a href="/link/character?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::character">character</a></code> string specifying the type of kernel
 to be used.

kernel

A positive <code><a href="/link/double?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::double">double</a></code> specifying the bandwidth threshold
 where values outside are ignored (zero weight).

censorH

If <code><a href="/link/TRUE?package=aroma.cn&version=0.5.2&to=base%3Alogical" rd-options="base:logical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, a robust smoother is used, otherwise not.

robust

Package: aroma.cn Class TotalCnKernelSmoothing<code><a href="/link/Object?package=aroma.cn&version=0.5.2&to=R.oo" rd-options="R.oo" data-mini-rdoc="R.oo::Object">Object</a></code><code>~~|</code><code>~~+--</code><code><a href="/link/AromaTransform?package=aroma.cn&version=0.5.2&to=aroma.core" rd-options="aroma.core" data-mini-rdoc="aroma.core::AromaTransform">AromaTransform</a></code><code>~~~~~~~|</code><code>~~~~~~~+--</code><code><a href="/link/TotalCnSmoothing?package=aroma.cn&version=0.5.2&to=aroma.cn" rd-options="aroma.cn" data-mini-rdoc="aroma.cn::TotalCnSmoothing">TotalCnSmoothing</a></code><code>~~~~~~~~~~~~|</code><code>~~~~~~~~~~~~+--</code><code>TotalCnKernelSmoothing</code>Directly known subclasses:public static class TotalCnKernelSmoothingextends <a href="/link/TotalCnSmoothing?package=aroma.cn&version=0.5.2&to=aroma.cn" rd-options="aroma.cn" data-mini-rdoc="aroma.cn::TotalCnSmoothing">TotalCnSmoothing</a>

classes

Package for analysis of copy-number estimates obtained
        from various platforms.

Henrik Bengtsson

aroma.cn

Copy-number analysis of large microarray data sets

TotalCnKernelSmoothing function

Methods:No methods defined.


 Methods inherited from TotalCnSmoothing:getAsteriskTags, getOutputFiles, getTargetPositions, getTargetUgpFile, process, smoothRawCopyNumbers

 Methods inherited from AromaTransform:getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags

 Methods inherited from Object:asThis, $, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

TotalCnKernelSmoothing: The TotalCnKernelSmoothing class

Description

Usage

Arguments

Fields and Methods