TotalCnSmoothing

An <code><a href="/link/AromaUnitTotalCnBinarySet?package=aroma.cn&version=0.5.2&to=aroma.core" rd-options="aroma.core" data-mini-rdoc="aroma.core::AromaUnitTotalCnBinarySet">AromaUnitTotalCnBinarySet</a></code>.

dataSet

Arguments passed to <code><a href="/link/AromaTransform?package=aroma.cn&version=0.5.2&to=aroma.core" rd-options="aroma.core" data-mini-rdoc="aroma.core::AromaTransform">AromaTransform</a></code>.

An <code><a href="/link/AromaUgpFile?package=aroma.cn&version=0.5.2&to=aroma.core" rd-options="aroma.core" data-mini-rdoc="aroma.core::AromaUgpFile">AromaUgpFile</a></code> specifying the
 target loci for which smoothed copy-number are generated.

targetUgp

A <code><a href="/link/double?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::double">double</a></code> specify the bandwidth of the smoothing.

bandwidth

.reqSetClass

Package: aroma.cn Class TotalCnSmoothing<code><a href="/link/Object?package=aroma.cn&version=0.5.2&to=R.oo" rd-options="R.oo" data-mini-rdoc="R.oo::Object">Object</a></code><code>~~|</code><code>~~+--</code><code><a href="/link/AromaTransform?package=aroma.cn&version=0.5.2&to=aroma.core" rd-options="aroma.core" data-mini-rdoc="aroma.core::AromaTransform">AromaTransform</a></code><code>~~~~~~~|</code><code>~~~~~~~+--</code><code>TotalCnSmoothing</code>Directly known subclasses:<a href="/link/TotalCnKernelSmoothing?package=aroma.cn&version=0.5.2&to=aroma.cn" rd-options="aroma.cn" data-mini-rdoc="aroma.cn::TotalCnKernelSmoothing">TotalCnKernelSmoothing</a>public abstract static class TotalCnSmoothingextends <a href="/link/AromaTransform?package=aroma.cn&version=0.5.2&to=aroma.core" rd-options="aroma.core" data-mini-rdoc="aroma.core::AromaTransform">AromaTransform</a>

classes

Package for analysis of copy-number estimates obtained
        from various platforms.

Henrik Bengtsson

aroma.cn

Copy-number analysis of large microarray data sets

TotalCnSmoothing function

Methods:<tabular>rll</tabular>{
 	<code>getTargetUgpFile</code> 	-	<code>process</code> 	-	<code>smoothRawCopyNumbers</code> 	-}


 Methods inherited from AromaTransform:getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags

 Methods inherited from Object:asThis, $, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

TotalCnSmoothing: The abstract TotalCnSmoothing class

Description

Usage

Arguments

Fields and Methods