callXXorXY.numeric

callXXorXY

A <code><a href="/link/numeric?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::numeric">numeric</a></code> <code><a href="/link/vector?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::vector">vector</a></code> containing ChrX allele B fractions.

betaX

A optional <code><a href="/link/numeric?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::numeric">numeric</a></code> <code><a href="/link/vector?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::vector">vector</a></code> containing ChrY allele B fractions.

betaY

A <code><a href="/link/character?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::character">character</a></code> string specifying the type of algorithm used.

flavor

A postive <code><a href="/link/double?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::double">double</a></code> specifying the amount smoothing for
    the empirical density estimator.

adjust

Additional arguments passed to <code><a href="/link/findPeaksAndValleys?package=aroma.cn&version=0.5.2" rd-options="" data-mini-rdoc="aroma.cn::findPeaksAndValleys">findPeaksAndValleys</a></code>().

A <code><a href="/link/double?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::double">double</a></code> <code><a href="/link/vector?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::vector">vector</a></code> of length two specifying the range
    for which values are considered finite.  Values below (above) this
    range are treated as -<

censorAt

A <code><a href="/link/logical?package=aroma.cn&version=0.5.2&to=base" rd-options="base" data-mini-rdoc="base::logical">logical</a></code> or a <code><a href="/link/Verbose?package=aroma.cn&version=0.5.2&to=R.utils" rd-options="R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code> object.

verbose

Calls XX or XY from ChrX allele B fractions of a normal sample.

methods

Package for analysis of copy-number estimates obtained
        from various platforms.

callXXorXY.numeric: Calls XX or XY from ChrX allele B fractions of a normal sample

Description

Usage

Arguments

Value

Missing and non-finite values

See Also