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aroma.cn (version 0.8.2)

AbstractCurveNormalization: The AbstractCurveNormalization class

Description

Package: aroma.cn Class AbstractCurveNormalization Object ~~| ~~+--AbstractCurveNormalization Directly known subclasses: PrincipalCurveNormalization, XYCurveNormalization public abstract static class AbstractCurveNormalization extends Object

Usage

AbstractCurveNormalization(dataSet=NULL, targetSet=NULL, subsetToFit=NULL, tags="*", copyTarget=TRUE, ...)

Arguments

dataSet
An AromaUnitTotalCnBinarySet of "test" samples to be normalized.
targetSet
An AromaUnitTotalCnBinarySet of paired target samples.
subsetToFit
The subset of loci to be used to fit the normalization functions. If NULL, loci on chromosomes 1-22 are used, but not on ChrX and ChrY.
tags
(Optional) Sets the tags for the output data sets.
copyTarget
If TRUE, target arrays are copied to the output data set, otherwise not.
...
Not used.

Fields and Methods

Methods: rll{ getFullName - getInputDataSet - getName - getOutputDataSet - getPath - getRootPath - getTags - getTargetDataSet - nbrOfFiles - process - setTags - } Methods inherited from Object: asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save