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aroma.cn (version 1.3.0)

TotalCnSmoothing: The abstract TotalCnSmoothing class

Description

Package: aroma.cn Class TotalCnSmoothing Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--TotalCnSmoothing Directly known subclasses: TotalCnBinnedSmoothing, TotalCnKernelSmoothing public abstract static class TotalCnSmoothing extends AromaTransform

Usage

TotalCnSmoothing(dataSet=NULL, ..., targetUgp=NULL, .reqSetClass="AromaUnitTotalCnBinarySet")

Arguments

...
Arguments passed to AromaTransform.
targetUgp
An AromaUgpFile specifying the target loci for which smoothed copy-number are generated.
.reqSetClass
(internal only)

Fields and Methods

Methods: rll{ getTargetUgpFile - process - } Methods inherited from AromaTransform: as.character, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags Methods inherited from ParametersInterface: getParameters, getParametersAsString, getParameterSets Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save