TotalCnKernelSmoothing: The TotalCnKernelSmoothing class

Description

Package: aroma.cn Class TotalCnKernelSmoothing Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--TotalCnSmoothing ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--TotalCnKernelSmoothing Directly known subclasses: public static class TotalCnKernelSmoothing extends TotalCnSmoothing

Usage

TotalCnKernelSmoothing(..., kernel=c("gaussian", "uniform"), bandwidth=50000, censorH=3, robust=FALSE)

Arguments

...

Arguments passed to TotalCnSmoothing.

kernel

A character string specifying the type of kernel to be used.

bandwidth

A double specifying the bandwidth of the smoothing.

censorH

A positive double specifying the bandwidth threshold where values outside are ignored (zero weight).

robust

If TRUE, a robust smoother is used, otherwise not.

Fields and Methods

Methods: No methods defined.

Methods inherited from TotalCnSmoothing: getAsteriskTags, getOutputDataSet0, getOutputFileClass, getOutputFileExtension, getOutputFileSetClass, getOutputFiles, getParameters, getPath, getRootPath, getTargetPositions, getTargetUgpFile, process, smoothRawCopyNumbers

Methods inherited from AromaTransform: as.character, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save, asThis