TotalCnSmoothing: The abstract TotalCnSmoothing class

Description

Package: aroma.cn Class TotalCnSmoothing Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--TotalCnSmoothing Directly known subclasses: TotalCnBinnedSmoothing, TotalCnKernelSmoothing public abstract static class TotalCnSmoothing extends AromaTransform

Usage

TotalCnSmoothing(dataSet=NULL, ..., targetUgp=NULL, .reqSetClass="AromaUnitTotalCnBinarySet")

Arguments

dataSet

An AromaUnitTotalCnBinarySet.

...

Arguments passed to AromaTransform.

targetUgp

An AromaUgpFile specifying the target loci for which smoothed copy-number are generated.

.reqSetClass

(internal only)

Fields and Methods

Methods: rll{ getTargetUgpFile - process - }

Methods inherited from AromaTransform: as.character, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save, asThis