Package: aroma.cn
Class TotalCnKernelSmoothing
Object
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ParametersInterface
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AromaTransform
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TotalCnSmoothing
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TotalCnKernelSmoothing
Directly known subclasses:
public static class TotalCnKernelSmoothing
extends TotalCnSmoothing
TotalCnKernelSmoothing(..., kernel=c("gaussian", "uniform"), bandwidth=50000, censorH=3,
robust=FALSE)
Arguments passed to TotalCnSmoothing
.
A character
string specifying the type of kernel
to be used.
A double
specifying the bandwidth of the smoothing.
A positive double
specifying the bandwidth threshold
where values outside are ignored (zero weight).
If TRUE
, a robust smoother is used, otherwise not.
Methods:
No methods defined.
Methods inherited from TotalCnSmoothing:
getAsteriskTags, getOutputDataSet0, getOutputFileClass, getOutputFileExtension, getOutputFileSetClass, getOutputFiles, getParameters, getPath, getRootPath, getTargetPositions, getTargetUgpFile, process, smoothRawCopyNumbers
Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags
Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis
Henrik Bengtsson