TotalCnSmoothing: The abstract TotalCnSmoothing class

Description

Package: aroma.cn
Class TotalCnSmoothing

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--TotalCnSmoothing

Directly known subclasses:
TotalCnBinnedSmoothing, TotalCnKernelSmoothing

public abstract static class TotalCnSmoothing
extends AromaTransform

Usage

TotalCnSmoothing(dataSet=NULL, ..., targetUgp=NULL,
  .reqSetClass="AromaUnitTotalCnBinarySet")

Arguments

dataSet: An AromaUnitTotalCnBinarySet.
...: Arguments passed to AromaTransform.
targetUgp: An AromaUgpFile specifying the target loci for which smoothed copy-number are generated.
.reqSetClass: (internal only)

Fields and Methods

Methods:

	`getTargetUgpFile`	-
	`process`	-

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

Author

Henrik Bengtsson