XYCurveNormalization

Package: aroma.cn 
Class XYCurveNormalization 
<code>Object</code> 
<code>~~|</code> 
<code>~~+--</code><code>AbstractCurveNormalization</code> 
<code>~~~~~~~|</code> 
<code>~~~~~~~+--</code><code>XYCurveNormalization</code> 
Directly known subclasses: 
 
public static class XYCurveNormalization 
extends AbstractCurveNormalization

classes

Methods for analyzing DNA copy-number data.  Specifically,
this package implements the multi-source copy-number normalization (MSCN)
method for normalizing copy-number data obtained on various platforms and
technologies.  It also implements the TumorBoost method for normalizing
paired tumor-normal SNP data.

Henrik Bengtsson

aroma.cn

Copy-Number Analysis of Large Microarray Data Sets

Pierre Neuvial

XYCurveNormalization function

<dl> <dt>...</dt>
<dd>Arguments passed to <code>AbstractCurveNormalization</code>.</dd></dl>

Arguments

Methods: 
No methods defined.Methods inherited from AbstractCurveNormalization: 
as.character, backtransformOne, fitOne, getAsteriskTags, getDataSets, getFullName, getInputDataSet, getName, getOutputDataSet, getPairedDataSet, getPath, getRootPath, getSubsetToFit, getTags, getTargetDataSet, nbrOfFiles, process, setTags
Methods inherited from Object: 
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

Fields and Methods

Author

Package: aroma.cn 
Class XYCurveNormalization 
<code>Object</code> 
<code>~~|</code> 
<code>~~+--</code><code>AbstractCurveNormalization</code> 
<code>~~~~~~~|</code> 
<code>~~~~~~~+--</code><code>XYCurveNormalization</code> 
Directly known subclasses: 
 
public static class XYCurveNormalization 
extends AbstractCurveNormalization

The XYCurveNormalization class — XYCurveNormalization

<dl>

 <dt>...</dt>
<dd>Arguments passed to <code>AbstractCurveNormalization</code>.</dd>

</dl>

Methods: 
No methods defined.

Methods inherited from AbstractCurveNormalization: 
as.character, backtransformOne, fitOne, getAsteriskTags, getDataSets, getFullName, getInputDataSet, getName, getOutputDataSet, getPairedDataSet, getPath, getRootPath, getSubsetToFit, getTags, getTargetDataSet, nbrOfFiles, process, setTags
Methods inherited from Object: 
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

XYCurveNormalization: The XYCurveNormalization class

Description

Usage

Arguments

Fields and Methods

Author