fitOne.MultiSourceCopyNumberNormalization

MultiSourceCopyNumberNormalization.fitOne

fitOne,MultiSourceCopyNumberNormalization-method

Fits the multi-source model for one sample.
 The model is fitted on the subset of units returned
 by <code>*getSubsetToFit()</code>.

methods

internal

Methods for analyzing DNA copy-number data.  Specifically,
this package implements the multi-source copy-number normalization (MSCN)
method for normalizing copy-number data obtained on various platforms and
technologies.  It also implements the TumorBoost method for normalizing
paired tumor-normal SNP data.

Henrik Bengtsson

aroma.cn

Copy-Number Analysis of Large Microarray Data Sets

Pierre Neuvial

fitOne.MultiSourceCopyNumberNormalization function

<dl> <dt>name</dt>
<dd>A <code><a href="/link/character?package=aroma.cn&version=1.6.1" data-mini-rdoc="aroma.cn::character">character</a></code> string specifying the sample name of interest.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>force</dt>
<dd>If <code><a href="/link/FALSE?package=aroma.cn&version=1.6.1" data-mini-rdoc="aroma.cn::FALSE">FALSE</a></code>, cached model fits are returned, otherwise not.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Fits the multi-source model for one sample — fitOne.MultiSourceCopyNumberNormalization

<dl>

 <dt>name</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string specifying the sample name of interest.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>force</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>FALSE</a></code>, cached model fits are returned, otherwise not.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

fitOne.MultiSourceCopyNumberNormalization: Fits the multi-source model for one sample

Description

Usage

Value

Arguments

Author

See Also