Package: aroma.cn
Class TotalCnSmoothing
Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--TotalCnSmoothing
Directly known subclasses:
TotalCnBinnedSmoothing, TotalCnKernelSmoothing
public abstract static class TotalCnSmoothing
extends AromaTransform
TotalCnSmoothing(dataSet=NULL, ..., targetUgp=NULL,
.reqSetClass="AromaUnitTotalCnBinarySet")
An AromaUnitTotalCnBinarySet.
Arguments passed to AromaTransform.
An AromaUgpFile specifying the
target loci for which smoothed copy-number are generated.
(internal only)
Methods:
getTargetUgpFile | - | |
process | - |
Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags
Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
Henrik Bengtsson