RawGenomicSignals: The RawGenomicSignals class
Usage
RawGenomicSignals(y=NULL, x=NULL, w=NULL, chromosome=NA, name=NULL, ...)
Arguments
y
A numeric vector of length J specifying the signal
at each locus. x
A (optional) numeric vector of length J specifying the
position of each locus. w
A (optional) non-negative numeric vector of length J
specifying a weight of each locus. chromosome
An (optional) integer specifying the chromosome for
these genomic signals. name
An (optional) @characte string specifying the sample name.
Fields and Methods
Methods:
rll{
addBy -
addLocusFields -
append -
as.data.frame -
binnedSmoothing -
divideBy -
estimateStandardDeviation Estimates the standard deviation of the raw Ys.
extractRegion -
extractSubset -
gaussianSmoothing -
getChromosome -
getLocusFields -
getName -
getPositions -
getSigma -
getSignals -
getWeights -
getXScale -
getXY -
getYScale -
hasWeights -
kernelSmoothing -
lines -
multiplyBy -
nbrOfLoci -
plot -
points -
setLocusFields -
setSigma -
setWeights -
setXScale -
setYScale -
signalRange -
sort -
subtractBy -
summary -
xMax -
xMin -
xRange -
xSeq -
}
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save