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aroma.core (version 1.2.0)

AromaCellTabularBinaryFile: The AromaCellTabularBinaryFile class

Description

Package: aroma.core Class AromaCellTabularBinaryFile Object ~~| ~~+--GenericDataFile ~~~~~~~| ~~~~~~~+--GenericTabularFile ~~~~~~~~~~~~| ~~~~~~~~~~~~+--AromaTabularBinaryFile ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AromaPlatformInterface ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--AromaMicroarrayTabularBinaryFile ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AromaCellTabularBinaryFile Directly known subclasses: AromaCellPositionFile, AromaCellSequenceFile public abstract static class AromaCellTabularBinaryFile extends AromaMicroarrayTabularBinaryFile A AromaCellTabularBinaryFile is an AromaTabularBinaryFile with the constraint that the rows map one-to-one to the cells (features) of a microarray.

Usage

AromaCellTabularBinaryFile(...)

Arguments

...
Arguments passed to AromaTabularBinaryFile.

Fields and Methods

Methods: rll{ nbrOfCells - } Methods inherited from AromaMicroarrayTabularBinaryFile: allocate, as.character, byChipType, findByChipType, getChipType, getFilenameExtension, getPlatform Methods inherited from AromaPlatformInterface: getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile Methods inherited from AromaTabularBinaryFile: [, [[, [<-, allocate, as.character, colMeans, colMedians, colStats, colSums, dimnames<-, getBytesPerColumn, getColClasses, getColumnNames, importFrom, lapply, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, readFooter, readHeader, readRawFooter, setAttributesByTags, subset, summary, updateData, updateDataColumn, writeFooter, writeRawFooter Methods inherited from GenericTabularFile: as.character, dim, extractMatrix, getColumnNames, getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, setColumnNameTranslator, translateColumnNames Methods inherited from GenericDataFile: compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

See Also

AromaUnitTabularBinaryFile.