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aroma.core (version 1.2.0)

AromaUnitCallSet: The AromaUnitCallSet class

Description

Package: aroma.core Class AromaUnitCallSet Object ~~| ~~+--GenericDataFileSet ~~~~~~~| ~~~~~~~+--GenericTabularFileSet ~~~~~~~~~~~~| ~~~~~~~~~~~~+--AromaTabularBinarySet ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AromaUnitSignalBinarySet ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitCallSet Directly known subclasses: AromaUnitGenotypeCallSet public static class AromaUnitCallSet extends AromaUnitSignalBinarySet An AromaUnitCallSet object represents a set of AromaUnitCallFiles with identical chip types.

Usage

AromaUnitCallSet(...)

Arguments

...
Arguments passed to AromaUnitSignalBinarySet.

Fields and Methods

Methods: rll{ extractCallArray - extractCalls - extractGenotypeMatrix - findByName - findUnitsTodo - fromFiles - } Methods inherited from AromaUnitSignalBinarySet: byName, findByName, getAromaUgpFile, getChipType, getPlatform, validate Methods inherited from GenericTabularFileSet: calculateAverageColumnAcrossFiles, extractMatrix Methods inherited from GenericDataFileSet: append, appendFiles, as.list, byName, clearCache, copyTo, equals, extract, findByName, fromFiles, getAlias, getFile, getFileClass, getFileSize, getFullName, getFullNames, getFullNameTranslator, getName, getNames, getPath, getPathnames, getTags, hasFile, hasTag, hasTags, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullName, setFullNamesTranslator, setFullNameTranslator, setName, setTags, update2, validate Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save