Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
Directly known subclasses:
public abstract static class AromaTransform
extends ParametersInterface
This abstract class represents a transform (algorithm/operator) that
transforms data. A transform has an input data set, which is
transformed into an output data set.AromaTransform(dataSet=NULL, tags="*", ..., .reqSetClass="AromaMicroarrayDataSet")AromaMicroarrayDataSet.getFullName Gets the full name of the output data set.
getInputDataSet Gets the input data set.
getName Gets the name of the output data set.
getOutputDataSet Gets the transformed data set.
getPath Gets the path of the output directory.
getRootPath Gets the root path of the output directory.
getTags Gets the tags of the output data set.
isDone Checks if the data set is processed or not.
process Processes the data set.
setTags -
}Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString
Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis
process() method.