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aroma.core (version 2.14.0)

extractRawCopyNumbers.CopyNumberChromosomalModel: Extracts relative copy numbers

Description

Extracts relative copy numbers for a particular array and chromosome.

Usage

## S3 method for class 'CopyNumberChromosomalModel':
extractRawCopyNumbers(this, array, chromosome, ..., logBase=2, cache=FALSE, force=FALSE,
  verbose=FALSE)

Arguments

array
The index of the array to be extracted.
chromosome
The index of the chromosome to be extracted.
...
See subclasses.
logBase
(optional) The base of the logarithm used for the ratios. If NULL, the ratios are not logged.
cache
If TRUE, results are cached, otherwise not.
force
If TRUE, cached results are ignored.
verbose
See Verbose.

Value

  • See subclasses.

Parallel processing

Except for an in-object caching (cache=TRUE), this method access data solely in an read-only fashion. This method is safe to call with different arrays and/or chromosomes in parallel.

See Also

For more information see CopyNumberChromosomalModel.