Object
~~|
~~+--Explorer
~~~~~~~|
~~~~~~~+--ChromosomeExplorer
Directly known subclasses:
public static class ChromosomeExplorer
extends ExplorerChromosomeExplorer(model=NULL, zooms=2^(0:6), ..., version=c("3"))CopyNumberChromosomalModel object.display -
getChromosomeLabels -
getChromosomes Gets the chromosomes available.
getFullNames -
getModel Gets the model.
getNames -
getPath -
getSampleLabels -
getZooms -
indexOf -
process Generates image files, scripts and dynamic pages for the explorer.
setArrays Sets the arrays.
setCytoband -
setZooms -
}
Methods inherited from Explorer:
addIncludes, addIndexFile, display, getAlias, getArraysOfInput, getAsteriskTags, getFullName, getIncludePath, getMainPath, getName, getNameOfInput, getNames, getParallelSafe, getPath, getReportPathPattern, getSampleLayerPrefix, getSubname, getTags, getTagsOfInput, getTemplatePath, nbrOfArrays, process, setAlias, setArrays, setParallelSafe, setReportPathPattern, setSubname, setup, splitByReportPathPattern
Methods inherited from Object:
asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, savepng2 device (a wrapper for
bitmap() immitating png()). The png() is only
used if png2(), which requires Ghostscript, does not.
Note, when images are created using png2(), the images does
not appear immediately, although the function call is completed,
so be patient.CopyNumberChromosomalModel.