aroma.core (version 2.4.1)

AromaUnitSignalBinarySet: The AromaUnitSignalBinarySet class

Description

Package: aroma.core Class AromaUnitSignalBinarySet Object ~~| ~~+--FullNameInterface ~~~~~~~| ~~~~~~~+--GenericDataFileSet ~~~~~~~~~~~~| ~~~~~~~~~~~~+--GenericTabularFileSet ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AromaTabularBinarySet ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitSignalBinarySet Directly known subclasses: AromaUnitCallSet, AromaUnitFracBCnBinarySet, AromaUnitGenotypeCallSet, AromaUnitTotalCnBinarySet public static class AromaUnitSignalBinarySet extends AromaTabularBinarySet An AromaUnitSignalBinarySet object represents a set of AromaUnitSignalBinaryFiles with identical chip types.

Usage

AromaUnitSignalBinarySet(...)

Arguments

...

Arguments passed to AromaTabularBinarySet.

Fields and Methods

Methods: rll{ byName - findByName - getAromaFullNameTranslatorSet - getAromaUgpFile - getChipType - getPlatform - writeDataFrame Writes the data set as a tab-delimited text file. } Methods inherited from AromaTabularBinarySet: getDefaultFullName, getRootName, setAttributesBy, setAttributesBySampleAnnotationFile, setAttributesBySampleAnnotationSet, setAttributesByTags Methods inherited from GenericTabularFileSet: calculateAverageColumnAcrossFiles, extractMatrix Methods inherited from GenericDataFileSet: getFullNameTranslatorSet, getParentName, append, appendFiles, appendFullNamesTranslator, appendFullNamesTranslatorBydata.frame, appendFullNamesTranslatorByfunction, appendFullNamesTranslatorBylist, appendFullNamesTranslatorByNULL, appendFullNamesTranslatorByTabularTextFile, appendFullNamesTranslatorByTabularTextFileSet, as.list, byName, byPath, clearCache, clearFullNamesTranslator, copyTo, equals, extract, findByName, getAlias, getChecksum, getChecksumObjects, getDefaultFullName, getFile, getFileClass, getFileSize, getFullNames, getNames, getPath, getPathnames, getSubdirs, hasFile, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullNamesTranslator, sortBy, update2, updateFullName, updateFullNames, validate Methods inherited from FullNameInterface: appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorBydata.frame, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, appendFullNameTranslatorByTabularTextFile, appendFullNameTranslatorByTabularTextFileSet, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName Methods inherited from Object: asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save