CopyNumberSegmentationModel: The CopyNumberSegmentationModel class
Usage
CopyNumberSegmentationModel(...)
Fields and Methods
Methods:
rll{
fit Fits the model.
getFullNames -
getRegions -
getTags -
plot -
plotCopyNumberRegionLayers -
writeRegions -
}
Methods inherited from CopyNumberChromosomalModel:
as.character, calculateChromosomeStatistics, calculateRatios, clearCache, estimateSds, extractRawCopyNumbers, fit, getChromosomeLength, getDataFileMatrix, getNames, getOptionalArguments, getPairedNames, getReferenceSetTuple, getRefSetTuple, isPaired, newPlot, plotAxesLayers, plotChromosomesLayers, plotCytobandLayers, plotFitLayers, plotGridHorizontalLayers, plotRawCopyNumbers, plotSampleLayers
Methods inherited from ChromosomalModel:
as.character, clearCache, fit, getAlias, getAromaGenomeTextFile, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSets, getSetTuple, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setGenome
Methods inherited from Object:
asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save