aroma.core (version 2.4.1)

doCBS.character: Performs CBS segmentation on a data set

Description

Performs CBS segmentation on a data set for one or more chip types.

Usage

## S3 method for class 'character':
doCBS(dataSets, tags=NULL, chipTypes, ..., verbose=FALSE)

Arguments

dataSets

A character string specifying the data set(s).

tags

And optional character vector of data set tags.

chipTypes

A character vector specifying the chip types to be used and merged.

...

Additional arguments passed to ...

verbose

A logical or Verbose.

Value

• Returns a ...

See Also

For more information see character.

Examples

library("aroma.cn");
verbose <- Arguments$getVerbose(-8, timestamp=TRUE);

dataSet <- "GSE20939";
tags <- "ACC,-XY,BPN,-XY,RMA,FLN,-XY";
chipTypes <- c("Mapping250K_Nsp", "Mapping250K_Sty");
fit <- doCBS(dataSet, tags=tags, chipTypes=chipTypes, verbose=verbose);
print(fit);