AromaRepository

urlPath

The <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.core&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code> to be used during processing.

verbose

Package: aroma.core 
Class AromaRepository<code><a rd-options="R.oo" href="/link/Object?package=aroma.core&version=3.0.0&to=R.oo" data-mini-rdoc="R.oo::Object">Object</a></code>
<code>~~|</code>
<code>~~+--</code><code>AromaRepository</code>Directly known subclasses:
public static class AromaRepository
extends <a rd-options="R.oo" href="/link/Object?package=aroma.core&version=3.0.0&to=R.oo" data-mini-rdoc="R.oo::Object">Object</a> An AromaRepository object provides methods for downloading annotation data
 from the Aroma repository.

classes

Core methods and classes used by higher-level aroma.* packages
part of the Aroma Project, e.g. aroma.affymetrix and aroma.cn.

Henrik Bengtsson

aroma.core

Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework

AromaRepository function

Methods:
<table><tr><td>
 </td>
<td> <code>downloadACC</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>downloadACM</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>downloadACP</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>downloadACS</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>downloadAll</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>downloadCDF</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code><a rd-options="aroma.core:downloadChipTypeFile.AromaRepository" href="/link/downloadChipTypeFile?package=aroma.core&version=3.0.0&to=aroma.core%3AdownloadChipTypeFile.AromaRepository" data-mini-rdoc="aroma.core:downloadChipTypeFile.AromaRepository::downloadChipTypeFile">downloadChipTypeFile</a></code> </td>
</tr><tr><td> Download a particular chip type annotation file.</td>
<td>
 </td>
</tr><tr><td> <code>downloadProbeSeqsTXT</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>downloadTXT</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>downloadUFL</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>downloadUGC</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>downloadUGP</code> </td>
<td> -</td>
</tr></table> Methods inherited from Object:
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

	`downloadACC`
-
`downloadACM`	-
	`downloadACP`
-
`downloadACS`	-
	`downloadAll`
-
`downloadCDF`	-
	`downloadChipTypeFile`
Download a particular chip type annotation file.
`downloadProbeSeqsTXT`	-
	`downloadTXT`
-
`downloadUFL`	-
	`downloadUGC`
-
`downloadUGP`	-

AromaRepository: The AromaRepository class

Description

Usage

Arguments

Methods