aroma.core (version 3.0.0)

AromaTransform: The AromaTransform class

Description

Package: aroma.core Class AromaTransform

Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform

Directly known subclasses:

public abstract static class AromaTransform extends ParametersInterface

This abstract class represents a transform (algorithm/operator) that transforms data. A transform has an input data set, which is transformed into an output data set.

Usage

AromaTransform(dataSet=NULL, tags="*", ..., .reqSetClass="AromaMicroarrayDataSet")

Arguments

dataSet

The input data set as an AromaMicroarrayDataSet.

tags

A character vector of tags to be appended to the tags of the input data set.

...

Not used.

.reqSetClass

Internal argument.

Fields and Methods

Methods:

	getFullName
Gets the full name of the output data set.
getInputDataSet	Gets the input data set.
	getName
Gets the name of the output data set.
getOutputDataSet	Gets the transformed data set.
	getPath
Gets the path of the output directory.
getRootPath	Gets the root path of the output directory.
	getTags
Gets the tags of the output data set.
isDone	Checks if the data set is processed or not.
	process
Processes the data set.
setTags	-

Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis

Details

Subclasses must implement the process() method.