SegmentedGenomicSignalsInterface

Package: aroma.core 
Class SegmentedGenomicSignalsInterface<code><a rd-options="R.oo" href="/link/Interface?package=aroma.core&version=3.0.0&to=R.oo" data-mini-rdoc="R.oo::Interface">Interface</a></code>
<code>~~|</code>
<code>~~+--</code><code>SegmentedGenomicSignalsInterface</code>Directly known subclasses:
<a rd-options="aroma.core" href="/link/SegmentedAlleleBFractions?package=aroma.core&version=3.0.0&to=aroma.core" data-mini-rdoc="aroma.core::SegmentedAlleleBFractions">SegmentedAlleleBFractions</a>, <a rd-options="aroma.core" href="/link/SegmentedCopyNumbers?package=aroma.core&version=3.0.0&to=aroma.core" data-mini-rdoc="aroma.core::SegmentedCopyNumbers">SegmentedCopyNumbers</a>public class SegmentedGenomicSignalsInterface
extends <a rd-options="R.oo" href="/link/Interface?package=aroma.core&version=3.0.0&to=R.oo" data-mini-rdoc="R.oo::Interface">Interface</a>

classes

Core methods and classes used by higher-level aroma.* packages
part of the Aroma Project, e.g. aroma.affymetrix and aroma.cn.

Henrik Bengtsson

aroma.core

Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework

SegmentedGenomicSignalsInterface function

Methods:
<table><tr><td>
 </td>
<td> <code>as.data.frame</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>binnedSmoothingByState</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>extractSubsetByState</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>findChangePointsByState</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>getStateColorMap</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>getStateColors</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>getStates</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>getUniqueStates</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>kernelSmoothingByState</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>plot</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>points</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr><tr><td> <code>setStateColorMap</code> </td>
<td> -</td>
</tr><tr><td>
 </td>
<td> <code>setStates</code> </td>
</tr><tr><td> -</td>
<td>
 </td>
</tr></table> Methods inherited from Interface:
extend, print, uses

	`as.data.frame`
-
`binnedSmoothingByState`	-
	`extractSubsetByState`
-
`findChangePointsByState`	-
	`getStateColorMap`
-
`getStateColors`	-
	`getStates`
-
`getUniqueStates`	-
	`kernelSmoothingByState`
-
`plot`	-
	`points`
-
`setStateColorMap`	-
	`setStates`
-

SegmentedGenomicSignalsInterface: The SegmentedGenomicSignalsInterface class interface

Description

Usage

Arguments

Fields and Methods