fit.CopyNumberSegmentationModel

CopyNumberSegmentationModel.fit

fit,CopyNumberSegmentationModel-method

A <code><a rd-options="base" href="/link/vector?package=aroma.core&version=3.0.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of array indices specifying which arrays to
   be considered.  If <code><a rd-options="base" href="/link/NULL?package=aroma.core&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all are processed.

arrays

A <code><a rd-options="base" href="/link/vector?package=aroma.core&version=3.0.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of chromosomes indices specifying which
    chromosomes to be considered.  If <code><a rd-options="base" href="/link/NULL?package=aroma.core&version=3.0.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all are processed.

chromosome

If <code><a rd-options="base:logical" href="/link/FALSE?package=aroma.core&version=3.0.0&to=base%3Alogical" data-mini-rdoc="base:logical::FALSE">FALSE</a></code>, the model will not be fitted again if it was
    already fitted.

force

Additional arguments passed to the segmentation method for
    the <code><a rd-options="aroma.core" href="/link/RawGenomicSignals?package=aroma.core&version=3.0.0&to=aroma.core" data-mini-rdoc="aroma.core::RawGenomicSignals">RawGenomicSignals</a></code>.

If <code><a rd-options="base:logical" href="/link/TRUE?package=aroma.core&version=3.0.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, the segmentation fit structures are
    returned for each fitted array and chromosome.

.retResults

A <code><a rd-options="base" href="/link/logical?package=aroma.core&version=3.0.0&to=base" data-mini-rdoc="base::logical">logical</a></code> or <code><a rd-options="R.utils" href="/link/Verbose?package=aroma.core&version=3.0.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose

methods

internal

Core methods and classes used by higher-level aroma.* packages
part of the Aroma Project, e.g. aroma.affymetrix and aroma.cn.

Henrik Bengtsson

aroma.core

Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework

fit.CopyNumberSegmentationModel function

Arguments in <code>...</code> are passed down to the internal fit function,
  which means that it is possible to fine tune even further.

fit.CopyNumberSegmentationModel: Fits the model

Description

Usage

Value

Additional arguments to the internal fit function

See Also