aroma.core (version 3.1.1)

BinnedScatter: The BinnedScatter class

Description

Package: aroma.core Class BinnedScatter

list ~~| ~~+--BinnedScatter

Directly known subclasses:

public class BinnedScatter extends list

Usage

BinnedScatter(data=NULL, density=NULL, map=NULL, params=NULL)

Arguments

data

A Nx2 @numaric matrix.

density

...

map

...

params

A list of parameters.

...

Not used.

Fields and Methods

Methods:

	plot	-
	points	-
	reorder	-
	subsample	-
	subset	-

Methods inherited from list: all.equal, as.CopyNumberDataSetTuple, as.data.frame, attachLocally, callHooks, exportAromaUnitPscnBinarySet, listToXml, mergeBoxplotStats, relist, within

See Also

The spatial density is estimated by internal functions of the smoothScatter package.

Examples

# NOT RUN {
# Sample scatter data
n <- 10e3
x <- rnorm(n=n)
y <- rnorm(n=n)
xy <- cbind(x=x, y=sin(x)+y/5)

# Bin data and estimate densities
xyd <- binScatter(xy)

layout(matrix(1:4, nrow=2))
par(mar=c(5,4,2,1))

# Plot data
plot(xyd, pch=1)

# Thin scatter data by subsampling
rhos <- c(1/3, 1/4, 1/6)
for (kk in seq_along(rhos)) {
  xyd2 <- subsample(xyd, size=rhos[kk])
  points(xyd2, pch=1, col=kk+1)
}

for (kk in seq_along(rhos)) {
  xyd2 <- subsample(xyd, size=rhos[kk])
  plot(xyd2, pch=1, col=kk+1)
  mtext(side=3, line=0, sprintf("Density: %.1f%%", 100*rhos[kk]))
}
# }

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