Package: aroma.core Class ChromosomalModel
Object
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ChromosomalModel
Directly known subclasses: CbsModel, CopyNumberChromosomalModel, CopyNumberSegmentationModel, GladModel, HaarSegModel, RawCopyNumberModel
public abstract static class ChromosomalModel extends Object
This abstract class represents a chromosomal model.
ChromosomalModel(cesTuple=NULL, tags="*", genome="Human", chromosomes=NULL, ...)
A character
string specifying what genome is process.
(optional) A vector
specifying which chromosomes
to process.
Not used.
Methods:
fit |
- | |
getChipType |
Gets a label for all chip types merged. | |
getChipTypes |
- | |
getChromosomes |
Gets the chromosomes to be processed. | |
getFullName |
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getFullNames |
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getGenome |
- | |
getName |
- | |
getNames |
Gets the names of the arrays. | |
getPath |
- | |
getSets |
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getTags |
- | |
indexOf |
- | |
nbrOfArrays |
Gets the number of arrays. | |
nbrOfChipTypes |
Gets the number of chip types. | |
setChromosomes |
- | |
setGenome |
- |
Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
This class requires genome information annotation files for every chip type.