aroma.core (version 3.1.1)

segmentByGLAD.RawGenomicSignals: Segment copy numbers using the GLAD method

Description

Segment copy numbers using the GLAD method of the GLAD package.

Usage

# S3 method for RawGenomicSignals
segmentByGLAD(this, ..., flavor=c("glad", "daglad"), cache=FALSE, force=FALSE,
  verbose=FALSE)

Arguments

...

Additional arguments passed to the segmentation function.

flavor

A character string specifying what flavor of GLAD should be used.

verbose

See Verbose.

Value

Returns the fit object.

Details

Internally glad or daglad is used to segment the signals. This segmentation method does not support weighted segmentation.

See Also

For more information see RawGenomicSignals.