AromaTransform: The AromaTransform class

Description

Package: aroma.core
Class AromaTransform

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform

Directly known subclasses:

public abstract static class AromaTransform
extends ParametersInterface

This abstract class represents a transform (algorithm/operator) that transforms data. A transform has an input data set, which is transformed into an output data set.

Usage

AromaTransform(dataSet=NULL, tags="*", ..., .reqSetClass="AromaMicroarrayDataSet")

Arguments

dataSet: The input data set as an AromaMicroarrayDataSet.
tags: A character vector of tags to be appended to the tags of the input data set.
...: Not used.
.reqSetClass: Internal argument.

Fields and Methods

Methods:

	`getFullName`	Gets the full name of the output data set.
	`getInputDataSet`	Gets the input data set.
	`getName`	Gets the name of the output data set.
	`getOutputDataSet`	Gets the transformed data set.
	`getPath`	Gets the path of the output directory.
	`getRootPath`	Gets the root path of the output directory.
	`getTags`	Gets the tags of the output data set.
	`isDone`	Checks if the data set is processed or not.
	`process`	Processes the data set.
	`setTags`	-

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author

Henrik Bengtsson

Details

Subclasses must implement the process() method.