SegmentedGenomicSignalsInterface

Package: aroma.core 
Class SegmentedGenomicSignalsInterface 
<code>Interface</code> 
<code>~~|</code> 
<code>~~+--</code><code>SegmentedGenomicSignalsInterface</code> 
Directly known subclasses: 
SegmentedAlleleBFractions, SegmentedCopyNumbers 
public class SegmentedGenomicSignalsInterface 
extends Interface

classes

Core methods and classes used by higher-level 'aroma.*' packages
part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.

Henrik Bengtsson

aroma.core

Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework

Mark Robinson

Ken Simpson

SegmentedGenomicSignalsInterface function

Arguments

Methods: <table class="table">
<tr><td></td><td><code>as.data.frame</code></td><td>-</td></tr>
<tr><td></td><td><code>binnedSmoothingByState</code></td><td>-</td></tr>
<tr><td></td><td><code>extractSubsetByState</code></td><td>-</td></tr>
<tr><td></td><td><code>findChangePointsByState</code></td><td>-</td></tr>
<tr><td></td><td><code>getStateColorMap</code></td><td>-</td></tr>
<tr><td></td><td><code>getStateColors</code></td><td>-</td></tr>
<tr><td></td><td><code>getStates</code></td><td>-</td></tr>
<tr><td></td><td><code>getUniqueStates</code></td><td>-</td></tr>
<tr><td></td><td><code>kernelSmoothingByState</code></td><td>-</td></tr>
<tr><td></td><td><code>plot</code></td><td>-</td></tr>
<tr><td></td><td><code>points</code></td><td>-</td></tr>
<tr><td></td><td><code>setStateColorMap</code></td><td>-</td></tr>
<tr><td></td><td><code>setStates</code></td><td>-</td></tr>
</table>Methods inherited from Interface: 
extend, print, uses

Fields and Methods

Author

Package: aroma.core 
Class SegmentedGenomicSignalsInterface 
<code>Interface</code> 
<code>~~|</code> 
<code>~~+--</code><code>SegmentedGenomicSignalsInterface</code> 
Directly known subclasses: 
SegmentedAlleleBFractions, SegmentedCopyNumbers 
public class SegmentedGenomicSignalsInterface 
extends Interface

The SegmentedGenomicSignalsInterface class interface — SegmentedGenomicSignalsInterface

Methods: <table class='table'>
<tr><td></td><td><code>as.data.frame</code></td><td>-</td></tr>
<tr><td></td><td><code>binnedSmoothingByState</code></td><td>-</td></tr>
<tr><td></td><td><code>extractSubsetByState</code></td><td>-</td></tr>
<tr><td></td><td><code>findChangePointsByState</code></td><td>-</td></tr>
<tr><td></td><td><code>getStateColorMap</code></td><td>-</td></tr>
<tr><td></td><td><code>getStateColors</code></td><td>-</td></tr>
<tr><td></td><td><code>getStates</code></td><td>-</td></tr>
<tr><td></td><td><code>getUniqueStates</code></td><td>-</td></tr>
<tr><td></td><td><code>kernelSmoothingByState</code></td><td>-</td></tr>
<tr><td></td><td><code>plot</code></td><td>-</td></tr>
<tr><td></td><td><code>points</code></td><td>-</td></tr>
<tr><td></td><td><code>setStateColorMap</code></td><td>-</td></tr>
<tr><td></td><td><code>setStates</code></td><td>-</td></tr>
</table>



Methods inherited from Interface: 
extend, print, uses

	`as.data.frame`	-
	`binnedSmoothingByState`	-
	`extractSubsetByState`	-
	`findChangePointsByState`	-
	`getStateColorMap`	-
	`getStateColors`	-
	`getStates`	-
	`getUniqueStates`	-
	`kernelSmoothingByState`	-
	`plot`	-
	`points`	-
	`setStateColorMap`	-
	`setStates`	-

SegmentedGenomicSignalsInterface: The SegmentedGenomicSignalsInterface class interface

Description

Usage

Arguments

Fields and Methods

Author