aroma.core (version 3.3.1)

segmentByGLAD.RawGenomicSignals: Segment copy numbers using the GLAD method

Description

Segment copy numbers using the GLAD method of the GLAD package.

Usage

# S3 method for RawGenomicSignals
segmentByGLAD(this, ..., flavor=c("glad", "daglad"), cache=FALSE, force=FALSE,
  verbose=FALSE)

Value

Returns the fit object.

Arguments

...

Additional arguments passed to the segmentation function.

flavor

A character string specifying what flavor of GLAD should be used.

verbose

See Verbose.

Author

Henrik Bengtsson

Details

Internally glad or daglad is used to segment the signals. This segmentation method does not support weighted segmentation.

See Also

For more information see RawGenomicSignals.