normalizeAverage

normalizeAverage.list

normalizeAverage.matrix

A <code><a rd-options="base" href="/link/numeric?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::numeric">numeric</a></code> NxK <code><a rd-options="base" href="/link/matrix?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::matrix">matrix</a></code> (or <code><a rd-options="base" href="/link/list?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::list">list</a></code> of length K).

An <code><a rd-options="base" href="/link/integer?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::integer">integer</a></code> in [1,K] specifying which channel should be
     the baseline.

baseline

A <code><a rd-options="base" href="/link/function?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::function">function</a></code> for calculating the average of one channel.

The average that each channel should have afterwards.
     If <code><a rd-options="base" href="/link/NULL?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, the baseline column sets the target average.

targetAvg

Additional arguments passed to the <code>avg</code> <code><a rd-options="base" href="/link/function?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::function">function</a></code>.


 Rescales channel vectors to get the same average.


methods

Methods for microarray analysis that take basic data types such as matrices and lists of vectors.  These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Henrik Bengtsson

aroma.light

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

normalizeAverage function

A <code><a href="numeric" rd-options="base">numeric</a></code> NxK <code><a href="matrix" rd-options="base">matrix</a></code> (or <code><a href="list" rd-options="base">list</a></code> of length K).

An <code><a href="integer" rd-options="base">integer</a></code> in [1,K] specifying which channel should be
     the baseline.

A <code><a href="function" rd-options="base">function</a></code> for calculating the average of one channel.

The average that each channel should have afterwards.
     If <code><a href="NULL" rd-options="base">NULL</a></code>, the baseline column sets the target average.

Additional arguments passed to the <code>avg</code> <code><a href="function" rd-options="base">function</a></code>.

Rescales channel vectors to get the same average.

normalizeAverage: Rescales channel vectors to get the same average

Description

Usage

Arguments

Value