pairedAlleleSpecificCopyNumbers

pairedAlleleSpecificCopyNumbers.numeric

Theta and allele-B fraction signals for the tumor.

thetaT, betaT

Total and allele-B fraction signals for the
    matched normal.

thetaN, betaN

An optional <code><a rd-options="base" href="/link/vector?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of length J containing
    normal genotypes calls in (0,1/2,1,<code><a rd-options="base" href="/link/NA?package=aroma.light&version=3.2.0&to=base" data-mini-rdoc="base::NA">NA</a></code>) for (AA,AB,BB).


 Calculating tumor-normal paired allele-specific copy number stratified on genotypes.
 The method is a single-sample (single-pair) method.
 It requires paired tumor-normal parent-specific copy number signals.


methods

Methods for microarray analysis that take basic data types such as matrices and lists of vectors.  These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Henrik Bengtsson

aroma.light

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

pairedAlleleSpecificCopyNumbers function

An optional <code><a href="vector" rd-options="base">vector</a></code> of length J containing
    normal genotypes calls in (0,1/2,1,<code><a href="NA" rd-options="base">NA</a></code>) for (AA,AB,BB).

Calculating tumor-normal paired allele-specific copy number stratified on genotypes.
 The method is a single-sample (single-pair) method.
 It requires paired tumor-normal parent-specific copy number signals.

pairedAlleleSpecificCopyNumbers: Calculating tumor-normal paired allele-specific copy number stratified on genotypes

Description

Usage

Arguments

Value

See Also