arrayQualityMetrics (version 3.28.2)

Quality metrics report for microarray data sets

Description

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

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Version

3.28.2

License

LGPL (>= 2)

Maintainer

Audrey Kauffmann

Last Published

February 15th, 2017

Functions in arrayQualityMetrics (3.28.2)

aqm.writereport

Write a quality report

prepdata

Compute useful summary statistics from a data object.

outliers

Helper functions for outlier detection and reporting in arrayQualityMetrics

outlierDetection

Represents the results from applying an outlier detection criterion to the arrays.

addXYfromGAL

Computing the coordinates of the spots on a slide

arrayQualityMetrics

Quality metrics for microarray experiments

aqmReportModule

Class to contain all the information to render a quality report module.

modulefunctions

Functions for computing quality report modules.